Table 1

Comparison of structural features between Oxy/Deoxy Hb

 

Deoxy (1hv4)

Oxy (1a4f)

α-chain

   

No. residues

141

141

Strands

0

0

α-helices

6  (69.5%)*

7  (66%)

310 helices

2  (5.7%)*

1  (4.3%)

2° Struct

HHGTTHTHTHTHG

HTHGTTHTHHTHTHTT

β-chain

   

No. residues

146

146

Strands

0

0

α-helices

7  (70.5%)

7  (68.5%)

310 helices

2  (8.9%)

2  (8.2%)

2° Struct

HHGHHTHTHGHT

HTHGHHTHHGHT

Deoxy: http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/1hv4/main.html

Oxy: http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/1a4f/main.html

Overall: 68.25% α-helix (ii+4), 6.775% 310-helix (ii+3).

*Note, the data in the shaded columns are most likely anomalous due to the relatively low resolution of the structure of the deoxy haemoglobin (2.80Å for 1vh4) vs. 2Å for the oxy haemoglobin (1a4f) as other deoxy haemoglobins (e.g., human adult, 2hhb; human foetal, 1fdh; P.bernacchii, 1hbh, etc.) showed no changes in the overall protein fold.